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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca23022.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | LBD | ||||||||
Protein Properties | Length: 231aa MW: 25704.5 Da PI: 6.6385 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 127.3 | 7.1e-40 | 5 | 105 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +C aCk+lrrkC+++Cv+apyf++eq + +fa++hk+FGasn+ kll++lp ++r++a+++l yeA+ar++dP+yG+v++i++lqqq+ +l+a+la+lk Dca23022.1 5 PCGACKFLRRKCVRGCVFAPYFCHEQgATHFAAIHKVFGASNIAKLLSQLPVDDRSEAATTLSYEAQARVHDPIYGCVSHIFALQQQVVSLQAQLATLK 103 7*************************89*********************************************************************99 PP DUF260 99 ee 100 ++ Dca23022.1 104 QQ 105 97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.64 | 4 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.9E-38 | 5 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MSGSPCGACK FLRRKCVRGC VFAPYFCHEQ GATHFAAIHK VFGASNIAKL LSQLPVDDRS 60 EAATTLSYEA QARVHDPIYG CVSHIFALQQ QVVSLQAQLA TLKQQTTNNM INVNYSTLNP 120 NAPSSSNYPQ DVQSWLQSQH PHMVLPPLDP NLDRTSKSSV IYGDHRYNQN NNSTTMMVQN 180 NDQDVSLASF DEGSSSHHSI ASTEFEFKSK WPFDEDSNDL HSMAFGYTQH S |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010679217.1 | 1e-105 | PREDICTED: LOB domain-containing protein 29 | ||||
Swissprot | Q9SLB6 | 3e-64 | LBD17_ARATH; LOB domain-containing protein 17 | ||||
TrEMBL | A0A0J8F3K9 | 1e-105 | A0A0J8F3K9_BETVU; Uncharacterized protein | ||||
STRING | VIT_07s0005g03020.t01 | 2e-80 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42440.1 | 5e-52 | LBD family protein |